Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3258Putative permease. (384 aa)    
Predicted Functional Partners:
CSIRO_2629
Permease.
 
 0.999
lptB
Lipopolysaccharide ABC transporter ATP-binding protein LptB.
 
 
 0.989
lptD
Outer membrane protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.949
CSIRO_3816
ABC-type transport system permease; Involved in resistance to organic solvents.
     
 0.916
rfbD
O-antigen export system permease protein RfbD.
    
  0.894
znuB
Zinc ABC transporter inner membrane permease protein ZnuB.
     
 0.876
potG
Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
     
  0.873
cysA
Sulfate and thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
     
  0.873
CSIRO_2490
Phosphonate ABC transporter phosphate-binding periplasmic component.
     
  0.873
pstS
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
     
  0.873
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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