Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3259Hypothetical protein. (436 aa)    
Predicted Functional Partners:
CSIRO_3835
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.868
CSIRO_3233
Putative glycosyl transferase.
  
 
 0.823
CSIRO_3875
ADP-heptose-lipooligosaccharide heptosyltransferase II.
 
 
 0.793
CSIRO_3878
Lipopolysaccharide heptosyltransferase I.
  
 
 0.720
CSIRO_0439
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.716
CSIRO_4011
Hypothetical protein.
 
   
 0.706
CSIRO_2337
Colicin V production protein.
  
  
 0.701
CSIRO_4095
Hypothetical protein.
  
     0.695
CSIRO_3230
Lipopolysaccharide biosynthesis.
 
 
 0.658
CSIRO_1023
Hypothetical protein.
  
     0.640
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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