Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3279Hypothetical protein. (636 aa)    
Predicted Functional Partners:
CSIRO_3420
Quino(hemo)protein alcohol dehydrogenase.
  
 0.880
CSIRO_0268
Glutamate synthase (NADPH) large chain.
    
  0.878
CSIRO_1448
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.781
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.718
CSIRO_2963
Flagellar hook-length control protein.
    
 0.678
CSIRO_2077
Isoquinoline 1-oxidoreductase beta subunit.
  
 0.671
CSIRO_2922
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.671
CSIRO_1249
Benzoyl-CoA oxygenase.
     
  0.664
CSIRO_3278
Putative PMT family glycosyltransferase.
       0.655
CSIRO_3277
PMT family glycosyltransferase.
       0.637
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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