Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
omlAOuter membrane lipoprotein OmlA. (133 aa)    
Predicted Functional Partners:
bamD
Putative competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 0.981
bamA
Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.978
CSIRO_3284
Hypothetical protein.
 
     0.739
CSIRO_1138
Transcriptional regulator, XRE family.
  
     0.713
CSIRO_0999
HemY-like protein.
  
     0.709
ppiD
Peptidyl-prolyl cis-trans isomerase PpiD.
  
 
 0.690
CSIRO_3285
Ubiquinol-cytochrome c chaperone.
 
     0.680
CSIRO_3184
Hypothetical protein.
  
     0.645
CSIRO_1267
Deoxycytidine triphosphate deaminase.
  
    0.617
CSIRO_0948
DNA polymerase III delta subunit.
 
     0.602
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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