Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3305Hypothetical protein. (191 aa)    
Predicted Functional Partners:
CSIRO_0638
RNA-binding S4.
  
    0.727
CSIRO_4080
Hypothetical protein.
  
     0.703
CSIRO_3812
Hypothetical protein.
  
     0.690
CSIRO_3303
Hypothetical protein.
 
     0.672
CSIRO_1336
Hypothetical protein.
  
     0.655
CSIRO_2344
Hypothetical protein.
  
     0.655
CSIRO_3361
TolA protein.
 
     0.641
bpt
arginyl-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
 
   
 0.629
CSIRO_0878
Hypothetical protein.
  
     0.618
CSIRO_2830
Sporulation domain protein.
  
     0.608
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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