Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_3310Endoribonuclease L-PSP. (133 aa)    
Predicted Functional Partners:
CSIRO_1236
Isochorismatase.
  
 
 0.707
CSIRO_1729
Anthranilate synthase.
    
 0.692
CSIRO_3820
Threonine dehydratase.
  
 0.571
mntH-2
Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
    0.482
CSIRO_3621
NAD(P)H oxidoreductase YRKL/ Putative NADPH-quinone reductase.
 
  
  0.465
CSIRO_4042
Putative decarboxylase.
    
 0.448
CSIRO_4016
Acetolactate synthase small subunit.
    
  0.443
CSIRO_0174
Translation elongation factor G-related protein.
    
  0.441
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.441
CSIRO_1640
Hypothetical protein.
  
     0.425
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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