Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3367Hypothetical protein. (94 aa)    
Predicted Functional Partners:
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.689
cheV
Chemotaxis protein CheV.
       0.661
CSIRO_3365
Pole remodelling regulatory diguanylate cyclase.
       0.654
CSIRO_3371
Glycerophosphoryl diester phosphodiesterase.
  
     0.579
CSIRO_0489
Hypothetical protein.
  
     0.554
CSIRO_3594
Hypothetical protein.
  
     0.507
CSIRO_3819
Hypothetical protein.
  
     0.480
CSIRO_0360
Hypothetical protein.
  
     0.441
CSIRO_1766
Hypothetical protein.
  
     0.430
CSIRO_0240
Ribonuclease T2; Belongs to the RNase T2 family.
  
     0.428
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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