Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3383D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (645 aa)    
Predicted Functional Partners:
ftsI
Cell division protein FtsI.
 
 
 0.858
mtgA
Peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.787
CSIRO_0990
Hypothetical protein.
 
  
 0.779
CSIRO_4270
ErfK/YbiS/YcfS/YnhG-like protein.
    
 0.771
CSIRO_1815
Hypothetical protein.
    
 0.760
CSIRO_0710
ErfK/YbiS/YcfS/YnhG-like protein.
    
 0.750
CSIRO_0453
Hypothetical protein.
    
 0.744
CSIRO_1897
Hypothetical protein.
    
 0.744
CSIRO_2668
ErfK/YbiS/YcfS/YnhG-like protein.
    
 0.744
CSIRO_2950
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.743
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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