Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3400Putative polysaccharide deacetylase precursor. (336 aa)    
Predicted Functional Partners:
CSIRO_3401
Putative polysaccharide deacetylase precursor.
 
    
0.757
CSIRO_3399
Hypothetical protein.
       0.522
CSIRO_2339
Hypothetical protein.
  
 
  0.467
CSIRO_3262
Hypothetical protein.
 
 
 0.452
CSIRO_1658
Hypothetical protein.
  
 
  0.442
CSIRO_3398
Transcriptional regulator, XRE family.
       0.430
CSIRO_4001
Hypothetical protein.
  
     0.428
CSIRO_0506
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.413
CSIRO_3979
Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
  0.409
CSIRO_3634
Dolichol-phosphate mannosyltransferase-like protein.
  
 
 0.407
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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