STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3409Acylphosphate phosphohydrolase, putative. (99 aa)    
Predicted Functional Partners:
CSIRO_2662
NAD-dependent malic enzyme.
    
 0.823
CSIRO_3411
Biotin carboxylase/ Biotin carboxyl carrier protein.
       0.760
CSIRO_3410
Hypothetical protein; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily.
       0.740
CSIRO_1351
Thioredoxin reductase.
    
  0.673
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
    
 0.672
CSIRO_2230
Putative acetyl-CoA synthetase.
     
 0.664
CSIRO_0368
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.624
CSIRO_2101
Aldehyde dehydrogenase.
     
 0.624
CSIRO_2212
Amidase.
    
  0.620
gatA
aspartyl-tRNA(Asn) amidotransferase subunit A/ glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.620
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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