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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3424Periplasmic binding protein. (263 aa)    
Predicted Functional Partners:
CSIRO_2158
Hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.892
CSIRO_0575
Vitamin B12 ABC transporter, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.881
CSIRO_0596
Vitamin B12 ABC transporter, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.877
hmuV
ABC-type hemin transport system; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 0.863
CSIRO_0574
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component.
 
 0.825
CSIRO_0597
ABC transporter-like protein.
 
 0.824
CSIRO_0580
Hypothetical protein.
  
    0.708
CSIRO_3425
Hypothetical protein.
       0.663
CSIRO_3423
Hydrogen peroxide response regulator; Belongs to the LysR transcriptional regulatory family.
       0.571
CSIRO_3428
Short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.495
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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