CSIRO_3432 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_3432

Indolepyruvate ferredoxin oxidoreductase. (1163 aa)

Predicted Functional Partners:

CSIRO_0270

0.981

CSIRO_1943

0.967

CSIRO_0637

0.964

CSIRO_1249

0.964

CSIRO_2922

0.959

CSIRO_1859

0.957

CSIRO_1944

0.957

CSIRO_2662

0.949

CSIRO_1049

0.941

tcuA

0.941

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0270	CSIRO_0637	CSIRO_0270	CSIRO_0637	Glutamate synthase (NADPH) small chain.	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.871
CSIRO_0270	CSIRO_1049	CSIRO_0270	CSIRO_1049	Glutamate synthase (NADPH) small chain.	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	0.421
CSIRO_0270	CSIRO_1249	CSIRO_0270	CSIRO_1249	Glutamate synthase (NADPH) small chain.	Benzoyl-CoA oxygenase.	0.804
CSIRO_0270	CSIRO_1859	CSIRO_0270	CSIRO_1859	Glutamate synthase (NADPH) small chain.	NAD-dependent formate dehydrogenase alpha subunit.	0.734
CSIRO_0270	CSIRO_1943	CSIRO_0270	CSIRO_1943	Glutamate synthase (NADPH) small chain.	Tungsten-containing formate dehydrogenase beta subunit.	0.994
CSIRO_0270	CSIRO_1944	CSIRO_0270	CSIRO_1944	Glutamate synthase (NADPH) small chain.	Tungsten-containing formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.696
CSIRO_0270	CSIRO_2662	CSIRO_0270	CSIRO_2662	Glutamate synthase (NADPH) small chain.	NAD-dependent malic enzyme.	0.794
CSIRO_0270	CSIRO_2922	CSIRO_0270	CSIRO_2922	Glutamate synthase (NADPH) small chain.	Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.489
CSIRO_0270	CSIRO_3432	CSIRO_0270	CSIRO_3432	Glutamate synthase (NADPH) small chain.	Indolepyruvate ferredoxin oxidoreductase.	0.981
CSIRO_0270	tcuA	CSIRO_0270	CSIRO_1967	Glutamate synthase (NADPH) small chain.	Flavoprotein TcuA.	0.421
CSIRO_0637	CSIRO_0270	CSIRO_0637	CSIRO_0270	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Glutamate synthase (NADPH) small chain.	0.871
CSIRO_0637	CSIRO_1049	CSIRO_0637	CSIRO_1049	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	0.589
CSIRO_0637	CSIRO_1249	CSIRO_0637	CSIRO_1249	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Benzoyl-CoA oxygenase.	0.785
CSIRO_0637	CSIRO_1943	CSIRO_0637	CSIRO_1943	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Tungsten-containing formate dehydrogenase beta subunit.	0.798
CSIRO_0637	CSIRO_2662	CSIRO_0637	CSIRO_2662	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NAD-dependent malic enzyme.	0.869
CSIRO_0637	CSIRO_3432	CSIRO_0637	CSIRO_3432	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Indolepyruvate ferredoxin oxidoreductase.	0.964
CSIRO_0637	tcuA	CSIRO_0637	CSIRO_1967	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Flavoprotein TcuA.	0.589
CSIRO_1049	CSIRO_0270	CSIRO_1049	CSIRO_0270	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	Glutamate synthase (NADPH) small chain.	0.421
CSIRO_1049	CSIRO_0637	CSIRO_1049	CSIRO_0637	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.589
CSIRO_1049	CSIRO_1249	CSIRO_1049	CSIRO_1249	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	Benzoyl-CoA oxygenase.	0.722