Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3508Hypothetical protein. (388 aa)    
Predicted Functional Partners:
CSIRO_0289
DNA helicase.
  
 
  0.760
CSIRO_1943
Tungsten-containing formate dehydrogenase beta subunit.
     
 0.739
CSIRO_4011
Hypothetical protein.
  
     0.737
CSIRO_0317
Hypothetical protein.
  
 
 0.736
CSIRO_4234
DNA helicase.
  
 
  0.725
CSIRO_3842
Glycosyltransferase.
 
 0.709
CSIRO_1023
Hypothetical protein.
  
  
  0.703
CSIRO_0272
TPR domain-containing protein.
   
 0.666
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.662
CSIRO_3847
Hypothetical protein.
   
 0.662
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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