STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3511Putative LuxR-family regulatory protein. (374 aa)    
Predicted Functional Partners:
CSIRO_0480
Hypothetical protein.
  
 
 0.943
CSIRO_4108
Hypothetical protein.
     
 0.782
CSIRO_1996
Two-component response regulator.
 
 0.764
CSIRO_3811
Hpt domain-containing protein.
     
 0.661
CSIRO_1339
Transcriptional regulator, LuxR family.
  
 0.614
CSIRO_2426
Two component transcriptional regulator, LuxR family.
  
 0.614
rpoC
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.454
CSIRO_2270
2-dehydro-3-deoxygluconate kinase.
  
  
  0.452
CSIRO_1997
Two-component hybrid sensor and regulator.
 
  
 0.438
CSIRO_1344
Metallo-beta-lactamase family protein.
  
 
   0.426
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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