Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3527Hypothetical protein. (564 aa)    
Predicted Functional Partners:
CSIRO_2365
Sensory box histidine kinase/response regulator.
 
  
 0.841
CSIRO_1497
DNA-directed RNA polymerase specialized sigma subunit.
 
  
 0.818
CSIRO_1027
Two-component response regulator.
  
  
  0.784
CSIRO_4108
Hypothetical protein.
 
  
 0.749
CSIRO_2016
Two-component hybrid sensor and regulator.
  
 0.743
CSIRO_0741
Two-component sensor histidine kinase.
  
 0.733
CSIRO_3755
Multi-sensor hybrid histidine kinase.
    
 0.692
CSIRO_0920
Two-component hybrid sensor and regulator.
    
 0.682
CSIRO_2841
CheY-like response regulator protein.
 
  
  0.668
cheA
Signal transduction histidine kinase CheA.
    
 0.623
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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