Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3599Hypothetical protein. (372 aa)    
Predicted Functional Partners:
CSIRO_1312
Hypothetical protein.
  
     0.711
CSIRO_3165
Hypothetical protein.
  
     0.708
CSIRO_1824
Hypothetical protein.
  
     0.682
CSIRO_3668
Hypothetical protein.
  
     0.676
CSIRO_0998
Hypothetical protein.
  
     0.674
CSIRO_0261
Hypothetical protein.
  
     0.658
CSIRO_4095
Hypothetical protein.
  
     0.654
CSIRO_2403
Hypothetical protein.
  
     0.642
CSIRO_1590
Hypothetical protein.
  
     0.638
CSIRO_0353
AsmA family protein.
  
     0.596
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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