Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3616Hypothetical protein. (500 aa)    
Predicted Functional Partners:
CSIRO_3617
Hypothetical protein.
    0.989
CSIRO_3618
Putative cysteine protease.
 
    0.924
CSIRO_3619
Hypothetical protein.
 
    0.859
CSIRO_0268
Glutamate synthase (NADPH) large chain.
     
  0.849
CSIRO_2526
Putative cysteine protease.
 
    0.812
CSIRO_0315
Hypothetical protein.
 
    0.810
CSIRO_2525
Protein of unknown function DUF404, DUF407, DUF403.
 
   
0.760
CSIRO_0314
Transglutaminase-like protein.
 
    0.716
CSIRO_1791
Transglutaminase-like domain-containing protein.
 
    0.675
CSIRO_3615
Molybdopterin binding motif-containing protein.
       0.649
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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