Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3619Hypothetical protein. (248 aa)    
Predicted Functional Partners:
CSIRO_3618
Putative cysteine protease.
 
    0.904
CSIRO_3617
Hypothetical protein.
 
    0.898
CSIRO_3616
Hypothetical protein.
 
    0.859
hslV
ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
     
 0.850
CSIRO_2525
Protein of unknown function DUF404, DUF407, DUF403.
 
    0.647
CSIRO_3620
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.509
CSIRO_3621
NAD(P)H oxidoreductase YRKL/ Putative NADPH-quinone reductase.
       0.493
CSIRO_0315
Hypothetical protein.
 
    0.453
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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