STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3621NAD(P)H oxidoreductase YRKL/ Putative NADPH-quinone reductase. (258 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.795
CSIRO_1642
Ornithine decarboxylase/ Arginine decarboxylase; Bifunctional; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.795
CSIRO_3620
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.776
wrbA
Flavoprotein WrbA.
    
 0.689
kefC
Glutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.534
CSIRO_3310
Endoribonuclease L-PSP.
 
  
  0.532
CSIRO_3619
Hypothetical protein.
       0.493
CSIRO_0178
Aspartate aminotransferase.
   
    0.468
CSIRO_0959
N-succinyl-L,L-diaminopimelate aminotransferase.
   
    0.468
CSIRO_2472
Aspartate aminotransferase.
   
    0.468
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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