Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3631Hypothetical protein. (350 aa)    
Predicted Functional Partners:
CSIRO_0970
Thioredoxin domain-containing protein.
    
   0.723
CSIRO_1102
Thioredoxin; Belongs to the thioredoxin family.
    
   0.723
CSIRO_0532
Hypothetical protein.
  
     0.713
CSIRO_0652
Hypothetical protein.
  
     0.696
CSIRO_0570
Hypothetical protein.
  
     0.687
CSIRO_3572
Flagellar protein.
  
 
 0.678
CSIRO_0162
Hypothetical protein.
  
     0.656
CSIRO_0241
Hypothetical protein.
  
  
 0.608
CSIRO_2457
Hypothetical protein.
  
     0.591
CSIRO_3303
Hypothetical protein.
  
     0.587
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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