Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3637Hypothetical protein. (218 aa)    
Predicted Functional Partners:
CSIRO_3561
TonB-dependent receptor.
     
 0.659
CSIRO_1038
OmpA/MotB.
   
 0.658
CSIRO_1253
OmpA/MotB-like protein.
   
 0.658
CSIRO_2320
Putative outer membrane protein.
   
 0.658
pal
Outer membrane lipoprotein omp16 precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 0.655
CSIRO_2051
Putative exported protein.
    
 0.638
CSIRO_1175
Capsule polysaccharide export protein.
     
  0.625
CSIRO_3231
Capsule polysaccharide export protein.
     
  0.625
lptD
Outer membrane protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
     
 0.615
CSIRO_2998
Putative porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
    
 0.611
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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