Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_3641ABC transporter ATP-binding protein. (313 aa)    
Predicted Functional Partners:
CSIRO_3640
Nitrate ABC transporter permease.
 
 0.999
CSIRO_3642
Putative Co/Zn/Cd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.967
CSIRO_4010
ABC transporter permease protein.
     
 0.849
CSIRO_3639
Adenylate cyclase.
    
  0.846
CSIRO_4048
ABC-type multidrug transport system, permease component.
  
 
 0.837
CSIRO_3643
Transcriptional regulator, TetR family.
 
     0.821
CSIRO_1217
Hypothetical protein.
  
 
 0.812
rfbD
O-antigen export system permease protein RfbD.
    
 0.757
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
  0.755
CSIRO_3816
ABC-type transport system permease; Involved in resistance to organic solvents.
    
 0.751
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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