Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3648Carbon monoxide dehydrogenase E protein. (397 aa)    
Predicted Functional Partners:
CSIRO_3649
Carbon monoxide dehydrogenase D protein.
 
     0.953
CSIRO_3650
Carbon monoxide dehydrogenase medium chain.
 
     0.936
CSIRO_3645
MobA-related protein.
 
     0.920
CSIRO_3647
Putative XdhC/CoxF family protein.
 
     0.880
CSIRO_3646
Carbon monoxide dehydrogenase F protein.
 
     0.875
CSIRO_3653
Carbon monoxide dehydrogenase G protein.
 
     0.773
CSIRO_0045
Carbon monoxide dehydrogenase G protein.
 
     0.772
CSIRO_1948
Carbon monoxide dehydrogenase G protein.
 
     0.771
CSIRO_0776
Carbon monoxide dehydrogenase large chain.
 
     0.768
CSIRO_0371
Carbon monoxide dehydrogenase D protein.
 
     0.764
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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