STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3655Hypothetical lactonase in carbon monoxide dehydrogenase cluster. (260 aa)    
Predicted Functional Partners:
CSIRO_3656
Beta-ketoadipate enol-lactone hydrolase.
 
 0.995
CSIRO_1946
4-carboxymuconolactone decarboxylase.
 
  
 0.972
CSIRO_3654
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.942
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 0.880
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.800
CSIRO_3986
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.789
CSIRO_1729
Anthranilate synthase.
    
 0.680
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.655
CSIRO_2005
ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.643
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.627
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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