Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSIRO_3655Hypothetical lactonase in carbon monoxide dehydrogenase cluster. (260 aa)    
Predicted Functional Partners:
CSIRO_3656
Beta-ketoadipate enol-lactone hydrolase.
 
 0.997
CSIRO_1946
4-carboxymuconolactone decarboxylase.
 
  
 0.982
CSIRO_3654
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.947
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.828
CSIRO_3986
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.819
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.766
CSIRO_1422
P-hydroxybenzoate hydroxylase.
  
 
 0.704
CSIRO_1651
Hypothetical protein.
     
  0.656
CSIRO_2123
Sulfide dehydrogenase flavoprotein chain precursor.
    
 0.633
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 0.616
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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