Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3662Hypothetical protein. (119 aa)    
Predicted Functional Partners:
CSIRO_3659
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.935
CSIRO_3660
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
 
     0.910
CSIRO_3658
High-affinity branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.904
CSIRO_3661
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
 
     0.863
CSIRO_3663
High-affinity leucine-specific transport system, periplasmic binding protein.
 
     0.859
CSIRO_0860
Hypothetical protein.
  
     0.528
CSIRO_2400
Hypothetical protein.
  
     0.507
CSIRO_0851
Hypothetical protein.
  
     0.450
CSIRO_0176
Protein of unknown function DUF992.
  
     0.414
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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