Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3675Hypothetical protein. (132 aa)    
Predicted Functional Partners:
CSIRO_3419
Hypothetical protein.
  
     0.717
CSIRO_1281
Hypothetical protein.
  
     0.685
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.682
CSIRO_0224
Hypothetical protein.
  
     0.654
CSIRO_4271
Hypothetical protein.
  
     0.642
CSIRO_1897
Hypothetical protein.
  
     0.634
CSIRO_2887
Hypothetical protein.
  
     0.625
rpsD
SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
     0.624
CSIRO_1090
Transcription activator.
  
     0.591
CSIRO_3386
Hypothetical protein.
  
     0.586
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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