Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3750Hypothetical protein. (136 aa)    
Predicted Functional Partners:
CSIRO_3751
Hypothetical protein.
       0.573
CSIRO_3749
Hypothetical protein.
       0.507
phnF
Transcriptional regulator PhnF.
  
  
 0.489
CSIRO_3752
Glutathione S-transferase.
       0.469
CSIRO_3835
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 0.443
CSIRO_0825
GCN5-related N-acetyltransferase.
 
  
  0.417
CSIRO_3654
3-carboxy-cis,cis-muconate cycloisomerase.
    
 0.413
CSIRO_3670
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.413
CSIRO_2662
NAD-dependent malic enzyme.
    
 0.405
CSIRO_1946
4-carboxymuconolactone decarboxylase.
    
 0.400
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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