flgK protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

flgK

Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. (620 aa)

Predicted Functional Partners:

flgE

0.998

fliG

0.989

fliN

0.988

CSIRO_3789

0.988

CSIRO_3790

0.988

fliF

0.985

flgD

0.985

flgC

0.985

flgH

0.985

flgG

0.984

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_3789	CSIRO_3790	CSIRO_3789	CSIRO_3790	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.426
CSIRO_3789	flgC	CSIRO_3789	CSIRO_3760	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.809
CSIRO_3789	flgD	CSIRO_3789	CSIRO_1670	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.925
CSIRO_3789	flgE	CSIRO_3789	CSIRO_3794	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook protein FlgE.	0.956
CSIRO_3789	flgG	CSIRO_3789	CSIRO_3772	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.	0.707
CSIRO_3789	flgH	CSIRO_3789	CSIRO_3774	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.875
CSIRO_3789	flgK	CSIRO_3789	CSIRO_3793	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.	0.988
CSIRO_3789	fliF	CSIRO_3789	CSIRO_1668	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.789
CSIRO_3789	fliG	CSIRO_3789	CSIRO_1667	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar motor switch protein FliG.	0.748
CSIRO_3789	fliN	CSIRO_3789	CSIRO_1665	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.	0.653
CSIRO_3790	CSIRO_3789	CSIRO_3790	CSIRO_3789	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.426
CSIRO_3790	flgC	CSIRO_3790	CSIRO_3760	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.809
CSIRO_3790	flgD	CSIRO_3790	CSIRO_1670	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.923
CSIRO_3790	flgE	CSIRO_3790	CSIRO_3794	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook protein FlgE.	0.954
CSIRO_3790	flgG	CSIRO_3790	CSIRO_3772	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.	0.707
CSIRO_3790	flgH	CSIRO_3790	CSIRO_3774	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.876
CSIRO_3790	flgK	CSIRO_3790	CSIRO_3793	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.	0.988
CSIRO_3790	fliF	CSIRO_3790	CSIRO_1668	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.788
CSIRO_3790	fliG	CSIRO_3790	CSIRO_1667	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar motor switch protein FliG.	0.739
CSIRO_3790	fliN	CSIRO_3790	CSIRO_1665	Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.	0.653