Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3803Hypothetical protein. (352 aa)    
Predicted Functional Partners:
CSIRO_0261
Hypothetical protein.
  
     0.650
CSIRO_0241
Hypothetical protein.
  
     0.632
CSIRO_3165
Hypothetical protein.
  
     0.592
CSIRO_1824
Hypothetical protein.
  
     0.549
CSIRO_3804
Hypothetical protein.
       0.519
CSIRO_2347
Hypothetical protein.
  
     0.504
CSIRO_4123
Putative bacterioferritin.
  
     0.503
CSIRO_2340
Hypothetical protein.
  
     0.484
CSIRO_2094
Hypothetical protein.
  
  
 0.424
CSIRO_1336
Hypothetical protein.
  
     0.422
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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