STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3807Rranscriptional regulator, AraC family. (322 aa)    
Predicted Functional Partners:
CSIRO_3808
Transcriptional regulatory protein.
 
    
0.785
CSIRO_2585
Transcriptional regulator, AraC family.
  
     0.727
CSIRO_0268
Glutamate synthase (NADPH) large chain.
    
  0.685
CSIRO_4108
Hypothetical protein.
   
 
 0.672
CSIRO_2662
NAD-dependent malic enzyme.
     
 0.665
CSIRO_1729
Anthranilate synthase.
     
 0.580
CSIRO_1886
Transcriptional regulatory protein.
  
     0.579
CSIRO_3806
Thioesterase superfamily protein.
       0.535
CSIRO_2365
Sensory box histidine kinase/response regulator.
  
 
 0.417
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.401
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.