Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSIRO_3817Muconate cycloisomerase. (334 aa)    
Predicted Functional Partners:
CSIRO_1727
Dienelactone hydrolase family.
  
 
 0.715
CSIRO_1176
Dienelactone hydrolase family.
   
 
 0.675
CSIRO_1851
Glyoxalase family protein.
     
 0.673
CSIRO_3814
Hypothetical protein.
       0.627
CSIRO_3815
Methionine ABC transporter ATP-binding protein.
       0.624
CSIRO_3816
ABC-type transport system permease; Involved in resistance to organic solvents.
       0.624
CSIRO_2257
Altronate hydrolase.
    
 0.596
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
  
 
 0.586
CSIRO_4151
Ornithine cyclodeaminase.
 
  
  0.541
CSIRO_3986
Protocatechuate 3,4-dioxygenase alpha chain.
  
 
 0.539
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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