Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
wbpBLipopolysaccaride biosynthesis protein WbpB. (313 aa)    
Predicted Functional Partners:
CSIRO_3849
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.946
CSIRO_3837
UDP-glucose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
 0.845
CSIRO_3850
N-Acetylneuraminate cytidylyltransferase.
       0.785
CSIRO_3851
Hypothetical protein.
       0.746
CSIRO_3832
DegT/DnrJ/EryC1/StrS family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.728
CSIRO_0979
Putative 2-pyrone-4,6-dicarboxylic acid hydrolase.
    
 0.678
CSIRO_0442
Inositol monophosphatase family protein.
    
 0.662
CSIRO_0513
Inositol-1-monophosphatase.
    
 0.662
tal
Transaldolase/ glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.649
CSIRO_0076
Putative gluconolactonase.
 
 
 0.569
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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