CSIRO_3889 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_3889

Arginase; Belongs to the arginase family. (318 aa)

Predicted Functional Partners:

CSIRO_1399

0.896

argH

0.882

CSIRO_2290

0.878

CSIRO_1259

0.867

CSIRO_0268

0.862

CSIRO_2219

0.848

CSIRO_4151

0.846

CSIRO_1642

0.821

argD

0.818

thiO

0.817

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0268	CSIRO_1259	CSIRO_0268	CSIRO_1259	Glutamate synthase (NADPH) large chain.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.775
CSIRO_0268	CSIRO_1399	CSIRO_0268	CSIRO_1399	Glutamate synthase (NADPH) large chain.	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.917
CSIRO_0268	CSIRO_2290	CSIRO_0268	CSIRO_2290	Glutamate synthase (NADPH) large chain.	Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.575
CSIRO_0268	CSIRO_3889	CSIRO_0268	CSIRO_3889	Glutamate synthase (NADPH) large chain.	Arginase; Belongs to the arginase family.	0.862
CSIRO_0268	argD	CSIRO_0268	CSIRO_1258	Glutamate synthase (NADPH) large chain.	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.575
CSIRO_0268	argH	CSIRO_0268	CSIRO_1570	Glutamate synthase (NADPH) large chain.	Argininosuccinate lyase.	0.627
CSIRO_0268	thiO	CSIRO_0268	CSIRO_4099	Glutamate synthase (NADPH) large chain.	Glycine oxidase ThiO.	0.904
CSIRO_1259	CSIRO_0268	CSIRO_1259	CSIRO_0268	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Glutamate synthase (NADPH) large chain.	0.775
CSIRO_1259	CSIRO_2290	CSIRO_1259	CSIRO_2290	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.940
CSIRO_1259	CSIRO_3889	CSIRO_1259	CSIRO_3889	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Arginase; Belongs to the arginase family.	0.867
CSIRO_1259	CSIRO_4151	CSIRO_1259	CSIRO_4151	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Ornithine cyclodeaminase.	0.637
CSIRO_1259	argD	CSIRO_1259	CSIRO_1258	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.994
CSIRO_1259	argH	CSIRO_1259	CSIRO_1570	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate lyase.	0.981
CSIRO_1399	CSIRO_0268	CSIRO_1399	CSIRO_0268	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Glutamate synthase (NADPH) large chain.	0.917
CSIRO_1399	CSIRO_2290	CSIRO_1399	CSIRO_2290	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.845
CSIRO_1399	CSIRO_3889	CSIRO_1399	CSIRO_3889	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Arginase; Belongs to the arginase family.	0.896
CSIRO_1399	CSIRO_4151	CSIRO_1399	CSIRO_4151	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Ornithine cyclodeaminase.	0.877
CSIRO_1399	argD	CSIRO_1399	CSIRO_1258	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.786
CSIRO_1399	thiO	CSIRO_1399	CSIRO_4099	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Glycine oxidase ThiO.	0.641
CSIRO_1642	CSIRO_2290	CSIRO_1642	CSIRO_2290	Ornithine decarboxylase/ Arginine decarboxylase; Bifunctional; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.792