Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3901Hypothetical protein. (300 aa)    
Predicted Functional Partners:
CSIRO_3561
TonB-dependent receptor.
    
 0.878
CSIRO_0798
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
 0.851
ftsK
Cell division protein FtsK.
    
 
 0.812
CSIRO_2963
Flagellar hook-length control protein.
  
 0.812
CSIRO_1573
Methyl-accepting chemotaxis protein.
    
 0.796
CSIRO_1175
Capsule polysaccharide export protein.
     
 0.755
CSIRO_3231
Capsule polysaccharide export protein.
     
 0.755
CSIRO_1983
3-hydroxyacyl-CoA dehydrogenase.
     0.747
CSIRO_0081
TonB-dependent receptor.
    
 
 0.742
CSIRO_2161
TonB-dependent hemin ferrichrome receptor.
    
 
 0.742
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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