STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3930long-chain-fatty-acid--CoA ligase. (643 aa)    
Predicted Functional Partners:
CSIRO_3929
Hypothetical protein.
 
    0.950
CSIRO_3932
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.945
CSIRO_3931
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.939
CSIRO_3933
ABC transporter substrate-binding protein.
 
    0.907
CSIRO_3934
ABC transporter substrate-binding protein.
 
    0.840
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
  0.819
CSIRO_3935
Phenylacetate-coenzyme A ligase.
 
    0.815
CSIRO_4217
High-affinity branched-chain amino acid transport ATP-binding protein.
  
    0.734
CSIRO_0317
Hypothetical protein.
   
 0.732
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
  
 
 0.701
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.