STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3935Phenylacetate-coenzyme A ligase. (410 aa)    
Predicted Functional Partners:
CSIRO_3934
ABC transporter substrate-binding protein.
 
 
  0.853
CSIRO_3930
long-chain-fatty-acid--CoA ligase.
 
    0.815
CSIRO_4217
High-affinity branched-chain amino acid transport ATP-binding protein.
  
 
  0.772
CSIRO_3929
Hypothetical protein.
 
    0.770
CSIRO_3106
Phenylacetic acid degradation protein.
 
 
 0.746
CSIRO_3933
ABC transporter substrate-binding protein.
 
    0.739
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
   
 0.735
CSIRO_3230
Lipopolysaccharide biosynthesis.
    
  0.718
CSIRO_3233
Putative glycosyl transferase.
    
  0.718
paaF
Phenylacetate-coenzyme A ligasePaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 
0.710
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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