Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_3935Phenylacetate-coenzyme A ligase. (410 aa)    
Predicted Functional Partners:
CSIRO_3934
ABC transporter substrate-binding protein.
 
 
  0.849
CSIRO_3930
long-chain-fatty-acid--CoA ligase.
 
    0.814
CSIRO_3106
Phenylacetic acid degradation protein.
 
 
 0.795
CSIRO_3929
Hypothetical protein.
 
    0.768
CSIRO_4217
High-affinity branched-chain amino acid transport ATP-binding protein.
 
 
  0.766
CSIRO_3933
ABC transporter substrate-binding protein.
 
    0.754
paaG
phenylacetate-CoA oxygenase, PaaG subunit.
  
 
 0.730
CSIRO_3932
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.717
paaH
phenylacetate-CoA oxygenase, PaaH subunit.
  
 
 0.716
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
   
 0.712
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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