Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3951Hypothetical protein. (293 aa)    
Predicted Functional Partners:
CSIRO_3952
methylglutaconyl-CoA hydratase.
       0.834
CSIRO_3954
geranyl-CoA carboxylase carboxyl transferase subunit.
       0.810
CSIRO_3955
long-chain-fatty-acid--CoA ligase.
       0.786
CSIRO_3953
methylcrotonyl-CoA carboxylase biotin-containing subunit.
       0.763
CSIRO_3956
Hypothetical protein.
 
    
0.707
CSIRO_3122
Cyclase.
 
  
 0.686
CSIRO_4044
3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.592
CSIRO_0350
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
 
  
 0.575
CSIRO_0067
Hypothetical protein.
  
  
 0.545
CSIRO_0772
3-oxoadipate CoA-transferase subunit B.
 
  
 0.500
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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