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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3966long-chain-fatty-acid--CoA ligase. (606 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.793
CSIRO_0317
Hypothetical protein.
   
 0.732
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
  
 
 0.701
CSIRO_3968
Branched-chain amino acid transport ATP-binding protein.
 
    0.687
CSIRO_2365
Sensory box histidine kinase/response regulator.
    
  0.666
CSIRO_4108
Hypothetical protein.
  
 
 0.660
CSIRO_3969
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.652
CSIRO_1341
Sensor histidine kinase.
     
 0.614
CSIRO_3965
Hypothetical protein.
 
    0.614
CSIRO_3935
Phenylacetate-coenzyme A ligase.
 
    0.608
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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