STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3986Protocatechuate 3,4-dioxygenase alpha chain. (195 aa)    
Predicted Functional Partners:
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
 
0.999
CSIRO_1422
P-hydroxybenzoate hydroxylase.
 
  
 0.938
CSIRO_3654
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.932
CSIRO_3656
Beta-ketoadipate enol-lactone hydrolase.
 
 
 0.900
CSIRO_1946
4-carboxymuconolactone decarboxylase.
 
 
 0.802
CSIRO_3655
Hypothetical lactonase in carbon monoxide dehydrogenase cluster.
 
  
 0.789
CSIRO_1851
Glyoxalase family protein.
     
 0.754
CSIRO_3990
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
       0.684
CSIRO_3988
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
       0.683
CSIRO_3989
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
       0.683
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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