STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3989Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name. (254 aa)    
Predicted Functional Partners:
CSIRO_3990
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
  0.979
CSIRO_3991
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.978
CSIRO_3988
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
 
 
 
0.890
CSIRO_1871
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.878
CSIRO_3993
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
 
 
  0.871
CSIRO_1872
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.864
CSIRO_0063
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.824
CSIRO_3992
Hypothetical protein.
       0.800
CSIRO_0064
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.785
CSIRO_0024
Branched-chain amino acid ABC-type transport system protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.772
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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