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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_3992Hypothetical protein. (515 aa)    
Predicted Functional Partners:
CSIRO_3988
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
       0.837
CSIRO_3989
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
       0.837
CSIRO_3990
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
       0.837
CSIRO_3991
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
       0.837
CSIRO_3986
Protocatechuate 3,4-dioxygenase alpha chain.
       0.722
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
       0.722
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
     
  0.710
parC
Topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
     
  0.710
CSIRO_3993
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
       0.567
CSIRO_3432
Indolepyruvate ferredoxin oxidoreductase.
    
  0.493
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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