Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3995Hypothetical protein. (452 aa)    
Predicted Functional Partners:
CSIRO_3994
Glutamine synthetase family protein.
 
  
  0.914
CSIRO_3993
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
 
     0.760
CSIRO_2825
Amidohydrolase.
  
  
 0.626
iorB
Indolepyruvate oxidoreductase subunit IorB.
  
     0.596
CSIRO_1248
Benzoyl-CoA oxygenase.
  
     0.571
CSIRO_1247
benzoyl-CoA-dihydrodiol lyase.
  
     0.568
CSIRO_4286
Adenylate cyclase.
 
  
 0.540
CSIRO_1761
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
     
 0.530
CSIRO_1249
Benzoyl-CoA oxygenase.
  
     0.475
CSIRO_4029
Tricarboxylate transport protein.
  
     0.469
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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