STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4002TRAP-like C4-dicarboxylate transport system, large permease component. (428 aa)    
Predicted Functional Partners:
CSIRO_4003
TRAP-like transport system, small permease component.
 
 0.992
CSIRO_4004
TRAP-like C4-dicarboxylate transport system, periplasmic component.
 
 
 0.968
CSIRO_1638
TRAP dicarboxylate transporter DctQ subunit.
 
 0.873
CSIRO_1639
TRAP transporter solute receptor.
 
 
 0.825
CSIRO_1006
TRAP-type C4-dicarboxylate transport system.
  
  
  0.737
CSIRO_2365
Sensory box histidine kinase/response regulator.
     
 0.727
CSIRO_1637
TRAP dicarboxylate transporter DctM subunit.
  
  
 
0.668
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
     
 0.668
CSIRO_2425
Biotin carboxylase.
    
  0.664
CSIRO_1007
Putative DctQ-like TRAP transporter.
  
  0.642
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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