CSIRO_4010 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_4010

ABC transporter permease protein. (519 aa)

Predicted Functional Partners:

CSIRO_4009

0.999

potG

0.918

CSIRO_2490

0.903

CSIRO_3010

0.884

CSIRO_2900

0.882

znuA

0.880

lptB

0.878

CSIRO_2070

0.877

pstS

0.877

CSIRO_4048

0.875

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_2070	CSIRO_2490	CSIRO_2070	CSIRO_2490	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	Phosphonate ABC transporter phosphate-binding periplasmic component.	0.821
CSIRO_2070	CSIRO_2900	CSIRO_2070	CSIRO_2900	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	ABC transporter, periplasmic substrate-binding protein.	0.982
CSIRO_2070	CSIRO_3010	CSIRO_2070	CSIRO_3010	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	Amino acid ABC transporter, permease protein.	0.820
CSIRO_2070	CSIRO_4009	CSIRO_2070	CSIRO_4009	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	ABC transporter, ATPase subunit.	0.831
CSIRO_2070	CSIRO_4010	CSIRO_2070	CSIRO_4010	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.877
CSIRO_2070	CSIRO_4048	CSIRO_2070	CSIRO_4048	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	ABC-type multidrug transport system, permease component.	0.766
CSIRO_2070	lptB	CSIRO_2070	CSIRO_0855	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	Lipopolysaccharide ABC transporter ATP-binding protein LptB.	0.818
CSIRO_2070	potG	CSIRO_2070	CSIRO_0356	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.819
CSIRO_2070	pstS	CSIRO_2070	CSIRO_2502	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.827
CSIRO_2070	znuA	CSIRO_2070	CSIRO_1629	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	Zinc ABC transporter periplasmic-binding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	0.785
CSIRO_2490	CSIRO_2070	CSIRO_2490	CSIRO_2070	Phosphonate ABC transporter phosphate-binding periplasmic component.	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	0.821
CSIRO_2490	CSIRO_2900	CSIRO_2490	CSIRO_2900	Phosphonate ABC transporter phosphate-binding periplasmic component.	ABC transporter, periplasmic substrate-binding protein.	0.873
CSIRO_2490	CSIRO_3010	CSIRO_2490	CSIRO_3010	Phosphonate ABC transporter phosphate-binding periplasmic component.	Amino acid ABC transporter, permease protein.	0.888
CSIRO_2490	CSIRO_4009	CSIRO_2490	CSIRO_4009	Phosphonate ABC transporter phosphate-binding periplasmic component.	ABC transporter, ATPase subunit.	0.667
CSIRO_2490	CSIRO_4010	CSIRO_2490	CSIRO_4010	Phosphonate ABC transporter phosphate-binding periplasmic component.	ABC transporter permease protein.	0.903
CSIRO_2490	CSIRO_4048	CSIRO_2490	CSIRO_4048	Phosphonate ABC transporter phosphate-binding periplasmic component.	ABC-type multidrug transport system, permease component.	0.873
CSIRO_2490	lptB	CSIRO_2490	CSIRO_0855	Phosphonate ABC transporter phosphate-binding periplasmic component.	Lipopolysaccharide ABC transporter ATP-binding protein LptB.	0.873
CSIRO_2490	potG	CSIRO_2490	CSIRO_0356	Phosphonate ABC transporter phosphate-binding periplasmic component.	Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.869
CSIRO_2490	pstS	CSIRO_2490	CSIRO_2502	Phosphonate ABC transporter phosphate-binding periplasmic component.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.910
CSIRO_2490	znuA	CSIRO_2490	CSIRO_1629	Phosphonate ABC transporter phosphate-binding periplasmic component.	Zinc ABC transporter periplasmic-binding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	0.744