Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSIRO_4020HtrA protease/chaperone protein; Belongs to the peptidase S1C family. (504 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.834
CSIRO_0317
Hypothetical protein.
   
 0.799
CSIRO_4108
Hypothetical protein.
  
  
 0.725
CSIRO_3317
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.706
CSIRO_0750
Putative serine protease.
    
 0.635
CSIRO_2381
Hypothetical protein.
    
 0.635
traF
Protease TraF; Type IV secretory pathway.
    
 0.629
hflC
HflC protein; HflC and HflK could regulate a protease.
 
 
 
 0.619
rplY
LSU ribosomal protein L25p; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.587
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
 
 
 
 0.585
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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