STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4021Putative inner membrane protein. (66 aa)    
Predicted Functional Partners:
hflC
HflC protein; HflC and HflK could regulate a protease.
     
 0.687
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
     
 0.687
CSIRO_1173
Hypothetical protein.
  
     0.676
CSIRO_3227
Hypothetical protein.
  
     0.637
CSIRO_1590
Hypothetical protein.
  
     0.623
CSIRO_4080
Hypothetical protein.
  
     0.588
CSIRO_0241
Hypothetical protein.
  
     0.585
CSIRO_3331
Putative outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.575
CSIRO_2998
Putative porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.572
CSIRO_3466
Putative outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.570
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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