Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4034Hypothetical protein. (166 aa)    
Predicted Functional Partners:
CSIRO_0384
Hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.791
CSIRO_1381
Hypothetical protein.
  
   
 0.746
CSIRO_1104
ATP-dependent nuclease subunit B.
  
     0.723
CSIRO_1741
Hypothetical protein.
  
     0.719
CSIRO_1103
ATP-dependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.688
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.678
atpF
ATP synthase B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.675
lysS
lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.672
CSIRO_0864
Glutathione S-transferase-like protein.
  
     0.661
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.649
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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