Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4051Hypothetical protein. (251 aa)    
Predicted Functional Partners:
CSIRO_3383
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.743
CSIRO_2950
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.714
CSIRO_1527
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.651
CSIRO_3531
Class C beta-lactamase.
     
  0.644
CSIRO_3682
Class C beta-lactamase.
     
  0.644
CSIRO_4050
Hypothetical protein.
       0.584
CSIRO_0343
Phasin 2.
  
     0.493
ftsI
Cell division protein FtsI.
     
 0.483
CSIRO_2344
Hypothetical protein.
  
     0.460
CSIRO_1292
Hypothetical protein.
  
     0.426
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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