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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4072Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
CSIRO_1912
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.671
CSIRO_4071
Major facilitator superfamily transporter.
 
     0.601
CSIRO_2184
Glycine cleavage system transcriptional activator.
  
     0.565
CSIRO_0424
Hydrogen peroxide response regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.552
CSIRO_2563
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.532
CSIRO_2100
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.491
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
       0.456
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.440
CSIRO_4069
Hypothetical protein.
       0.440
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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