Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4080Hypothetical protein. (136 aa)    
Predicted Functional Partners:
ftsI
Cell division protein FtsI.
 
    0.876
rsmH
rRNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.837
CSIRO_3305
Hypothetical protein.
  
     0.703
CSIRO_2347
Hypothetical protein.
  
     0.645
CSIRO_3165
Hypothetical protein.
  
     0.624
CSIRO_3812
Hypothetical protein.
  
     0.609
CSIRO_1173
Hypothetical protein.
  
     0.602
CSIRO_0241
Hypothetical protein.
  
     0.597
CSIRO_4021
Putative inner membrane protein.
  
     0.588
fliJ
Flagellar protein FliJ.
  
     0.569
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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